PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461107.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 405aa    MW: 44716.7 Da    PI: 8.993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05162184223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      Cp Cg+ F+  ++L++H+ + H
  XP_016461107.1 162 ACPECGEIFPKIESLEHHQAVrH 184
                     6******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.829161189IPR007087Zinc finger, C2H2
PROSITE patternPS000280161184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.5E-12186401IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.92E-24186401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MALFTFLPEA SETQKQPSKR RKKQQKQKQP SSWDQFKNLL SCKQIENSTV DDPSKNAYYS  60
KLGSCSSICS FKDVVLHHGN NTRVVHRVDD NNNSLEDQSS SSLGQETRLL SKKTSHGSTS  120
SRSFGSSTSS KGMQFRKLSR CYECHMIVDP SRHPLPRSTI CACPECGEIF PKIESLEHHQ  180
AVRHAVSELS PEDSSRNIVE IIFKSSWLKK DNPICKIERI LKVHNTKRII HKFEDYRDAV  240
KLRATVNGKK NPRCAADGNE LLRFYCTTLT CSLGAKGTSN LCSSVCTPGC GVCTIIRHGF  300
QGNNNKVCGV RTTASSGRAH DCLGSGADGR RAMLVCRVIA GRVKRVAEDT AATEESGGSG  360
LSAAANLYDS VVGYSDVYSN LEELYVFNPR AILPCFVVIY KALES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097401e-33FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence.
GenBankHG9754431e-33HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461107.10.0PREDICTED: uncharacterized protein LOC107784482
TrEMBLA0A068UFR50.0A0A068UFR5_COFCA; Uncharacterized protein
STRINGVIT_18s0001g14130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-147C2H2-like zinc finger protein